Kazumori Mise is a postdoctoral fellow at The National Institute of Advanced Industrial Science and Technology (AIST), Japan. He received a Bachelor degree of Agricultural and Life Sciences from The University of Tokyo in 2015. He continued his study at Soil Science Laboratory and received a Master degree of Agricultural and Life Sciences from The University of Tokyo in 2017, for the study in soil microbial communities driving phosphorus cycling. He then started to study microbial metagenomics and bioinformatics, under the direction of Professor Wataru Iwasaki (Wataru Iwasaki Laboratory: Laboratory of Bioinformatics). After receiving a Ph.D. in bioinformatics in 2020, he started working as a postdoctoral fellow at AIST in April 2021. His motivation is directed to bridging microscopic phenomena/concepts (molecular biology, genome structures, etc.) and macroscopic phenomena/concepts (ecophysiology, community dynamics, material circulation, etc.) using bioinformatics. Current research topics include soil metagenomics, ecology of microbes involved in greenhouse gas emissions/deletions, and development of bioinformatic methods fueling these studies.

Refereed Publications

Preprints are available upon request. Feel free to contact me by e-mail or via ResearchGate.

11)

Kazumori Mise and Wataru Iwasaki.
Unexpected absence of ribosomal protein genes from metagenome-assembled genomes.
ISME Commun. (2022) 2:118

10)

Hideomi Itoh*, Zhenxing Xu*, Kazumori Mise, Yoko Masuda, Natsumi Ushijima, Chie Hayakawa, Yutaka Shiratori, and Keishi Senoo. (*: co-first authorship)
Anaeromyxobacter oryzae sp. nov., Anaeromyxobacter diazotrophicus sp. nov. and Anaeromyxobacter paludicola sp. nov., isolated from paddy soils.
Int J Syst Evol Microbiol. (2022) 72(10):005546

9)

Kazumori Mise, Yoko Masuda, Keishi Senoo, and Hideomi Itoh.
Undervalued pseudo-nifH sequences in public databases distort metagenomic insights into biological nitrogen fixers.
mSphere (2021) 6(6):e00785-21

8)

Kazumori Mise and Wataru Iwasaki.
Environmental atlas of prokaryotes enables powerful and intuitive habitat-based analysis of community structures.
iScience (2020) 23(10):101624

7)

Yu Maeda, Kazumori Mise, Wataru Iwasaki, Akira Watanabe, Susumu Asakawa, Rasit Asiloglu, and Jun Murase.
Invention of artificial rice field soil: A tool to study the effect of soil components on the activity and community of microorganisms involved in anaerobic organic matter decomposition.
Microbes Environ. (2020) 35:ME20093

6)

Kazumori Mise and Shigeto Otsuka.
Eukaryotic microbial communities in Japanese arable Andisols investigated by amplicon sequencing of 18S rRNA genes.
Microbiol Resour Announc. (2020) 10:e00218-20

5)

Kazumori Mise, Yuki Koyama, Arisa Matsumoto, Kazuki Fujita, Takashi Kunito, Keishi Senoo, and Shigeto Otsuka.
Pectin drives microbial phosphorus solubilization in soil: Evidence from isolation-based and community-scale approaches.
Eur J Soil Biol. (2020) 97:103169

4)

Takashi Kunito, Hitoshi Moro, Kazuki Fujita, Kazumori Mise, Kazunari Nagaoka, and Shigeto Otsuka.
Microorganisms enhancing phosphorus availability in arable soils.
Soil Microorganisms (2019) 73:41–54 (In Japanese)

3)

Kazumori Mise, Runa Maruyama, Yuichi Miyabara, Takashi Kunito, Keishi Senoo, and Shigeto Otsuka.
Time-series analysis of phosphorus-depleted microbial communities in carbon/nitrogen-amended soils.
Appl Soil Ecol. (2020) 145:103346

2)

Kazumori Mise, Hitoshi Moro, Takashi Kunito, Keishi Senoo, and Shigeto Otsuka.
Prokaryotic community structure of long-term fertilization field Andisols in central Japan.
Microbiol Resour Announc. (2019) 8:e01551-18

1)

Kazumori Mise, Kazuki Fujita, Takashi Kunito, Keishi Senoo, and Shigeto Otsuka.
Phosphorus-mineralizing communities reflect nutrient-rich characteristics in Japanese arable Andisols.
Microbes Environ. (2018) 33:282–289

Journal Clubs

Oct 2020 @Iwasaki Lab: Predicting the dynamics of microbial community after perturbation

The role of multiple global change factors in driving soil functions and microbial biodiversity. Science 2019
Thresholds for ecological responses to global change do not emerge from empirical data. Nat Ecol Evol. 2020
Phylogenetic conservation of soil bacterial responses to simulated global changes. Philos Trans R Soc B 2020
Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. ISME J. 2020
Trait-based life-history strategies explain succession scenario for complex bacterial communities under varying disturbance. Environ Microbiol. 2019

Apr 2020 @Iwasaki Lab: Bridging bacterial genomics and life history strategy using state-of-the-art long-read sequencing

Unlinked rRNA genes are widespread among bacteria and archaea. ISME J. 2019

Oct 2019 @Iwasaki Lab: Same author, similar methods, yet quite different questions

Changes in belowground biodiversity during ecosystem development. PNAS 2019
Experimentally testing the species-habitat size relationship on soil bacteria: A proof of concept. Soil Biol Biochem. 2018
It is elemental: soil nutrient stoichiometry drives bacterial diversity. Environ Microbiol. 2016
Paleoclimate explains a unique proportion of the global variation in soil bacterial communities. Nat Ecol Evol. 2017
Obscure soil microbes and where to find them. ISME J. 2019

Jan 2019 @Iwasaki Lab: Incorporating interspecies interactions to microbial community ecology

Community structure follows simple assembly rules in microbial microcosms. Nat Ecol Evol. 2017

Mar 2018 @Iwasaki Lab: Bacterial phenotype database empowering the trait-based approach

Hiding in plain sight: Mining bacterial species records for phenotypic trait information. mSphere 2017
Variation in range size and dispersal capabilities of microbial taxa. Ecology 2017

Jan 2018 @Iwasaki Lab: Wet-lab methods with implication for bioinformatic studies

Assembly of microbial communities in replicate nutrient-cycling model ecosystems follows divergent trajectories, leading to alternate stable states. Environ Microbiol. 2017
Ammonia oxidisers in a non-nitrifying Brazilian savanna soil. FEMS Microbiol Ecol. 2017
Bacterial culturability and the viable but non-culturable (VBNC) state studied by a proteomic approach using an artificial soil. Soil Biol Biochem. 2018
How, when, and where relic DNA biases estimates of microbial diversity. bioRxiv 2017
Rapid degradation of longer DNA fragments enables the improved estimation of distribution and biomass using environmental DNA. Mol Ecol Resour. 2017

Oct 2016 @Soil Science Lab: Functional redundancy of bacterial community

Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance. Environ Microbiol. 2007
Community history affects the predictability of microbial ecosystem development. ISME J. 2014

Oct 2015 @Soil Science Lab: Community assembly processes: Niche-based vs Stochastic

Changes in assembly processes in soil bacterial communities following a wildfire disturbance. ISME J. 2013

Activities

Affiliated Societies

Japanese Society for Bioinformatics
The Ecological Society of Japan
Japanese Society of Microbial Ecology
Japanese Society of Soil Microbiology
Japanese Society of Soil Science and Plant Nutrition
Society of Genome Microbiology, Japan

Ad hoc Reviewer (not up-to-date)

Applied Soil Ecology (9)
Microbes and Environments (9)
Ecotoxicology and Environmental Safety (2)
Geoderma (2)
Scientific Reports (2)
Ecological Research (1)
Microbiology Spectrum (1)
Soil Science and Plant Nutrition (1)
Japanese Journal of Soil Science and Plant Nutrition (1)

Present/previous supervisors and co-workers

Dr. Hideomi Itoh, National Institute of Advanced Industrial Science and Technology (AIST) Hokkaido
Wataru Iwasaki Laboratory, The University of Tokyo: Professor Wataru Iwasaki
Soil Science Laboratory, The University of Tokyo: Dr. Shigeto Otsuka, Professor Keishi Senoo
Professor Takashi Kunito, Shinshu University
Dr. Takashi Shimada, The University of Tokyo
Professor Jun Murase, Nagoya University

Contact

mise-33 [AT] aist.go.jp; mise-33 [AT] bs.s.u-tokyo.ac.jp

Microbial Ecology and Technology Research Group, The National Institute of Advanced Industrial Science and Technology (AIST)

AIST Hokkaido, 2-17-2-1, Tsukisamu-Higashi, Toyohira-ku, Sapporo, Hokkaido, 062-8517 Japan.

Kazumori Mise, Ph.D.

Microbial Community Ecology

Bioinformatics

Soil Science

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