How to use ProkAtlas

ProkAtlas Online Toolkit is currently unstable. Please consider migrating to the standalone pipeline.

We provide web user interface (ProkAtlas Online) here. We also provide databases and scripts for calculating habitat preference scores.

To obtain the habitat preference information of individual prokaryotic species, you just need their intact 16S ribosomal RNA/DNA sequence(s). If you like to calculate habitat preference scores (i.e. habitat compositions) of prokaryotic communities, also prepare a tab-spaced OTU table along with 16S rRNA/rDNA sequences (i.e. OTU representative sequences).

History

2020-08-30 Updated pipelines.
2020-06-28 Updated pipelines and database.
2019-10-01 Released ProkAtlas.

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