How to use ProkAtlas

We provide web user interface (ProkAtlas Online) here. We also provide databases and scripts for calculating habitat preference scores.

To obtain the habitat preference information of individual prokaryotic species, you just need their intact 16S ribosomal RNA/DNA sequence(s). If you like to calculate habitat preference scores (i.e. habitat compositions) of prokaryotic communities, also prepare a tab-spaced OTU table along with 16S rRNA/rDNA sequences (i.e. OTU representative sequences).

A short guide to ProkAtlas Online:


2020-08-30 Updated pipelines.
2020-06-28 Updated pipelines and database.
2019-10-01 Released ProkAtlas.