How to use ProkAtlas

ProkAtlas Online Toolkit will be temporarily unavailable because of the scheduled blackout. Possible down time is scheduled as follows:
Greenwich Mean Time (GMT): Sep 23 (Fri), 2022 from 12:00 GMT - Sep 24 (Sat) 18:00 GMT
New York, USA: Sep 23 (Fri), 2022 from 7:00 EST - Sep 24 (Sat) 13:00 EST
Los Angeles, USA: Sep 23 (Fri), 2022 from 4:00 PDT - Sep 24 (Sat) 10:00 PDT
Beijing, China: Sep 23 (Fri), 2022 from 20:00 CST - Sep 24 (Sat), 17:00 CST
Tokyo, Japan: Sep 23 (Fri), 2022 from 21:00 JST - Sep 24 (Sat), 18:00 JST

We provide web user interface (ProkAtlas Online) here. We also provide databases and scripts for calculating habitat preference scores.

To obtain the habitat preference information of individual prokaryotic species, you just need their intact 16S ribosomal RNA/DNA sequence(s). If you like to calculate habitat preference scores (i.e. habitat compositions) of prokaryotic communities, also prepare a tab-spaced OTU table along with 16S rRNA/rDNA sequences (i.e. OTU representative sequences).


2020-08-30 Updated pipelines.
2020-06-28 Updated pipelines and database.
2019-10-01 Released ProkAtlas.